Publications
Current editorial positions:
Co-Editor in Chief: Journal of Phycology
Editorial Board: Scientific Data, Biology, Microorganisms, European Journal of Phycology
Past editorial positions:
Editorial Board: The ISME Journal, Perspectives in Phycology, Algological Studies, Frontiers in Marine Science
Journal Articles, Preprints, Books, Edited Book Chapters, Reports and Patents, Special Issues
(Preprints will be removed from this list once they have been published in a peer-reviewed journal)
Journal Articles, Preprints, and Books
Oliver White, Sarah Walkington, Hugh Carter, Lauren Hughes, Melody Clark, Thomas Mock, Geraint Tarling, Matt Clark (2024) Exome capture of Antarctic krill (Euphausia superba) for cost effective genotyping and population genetics with historical collections. Molecular Ecological Resources (https://doi.org/10.1111/1755-0998.14022)
Jianwei Chen, Yangyang Jian, Ying Sun, Kun Liu, Changhao Zhou, Chuan Liu, Denghui Li, Guilin Liu, Chengsong Zhang, Tao Yang, Lei Huang, Yunyun Zhuang, Dazhi Wang, Dayou Xu, Qiaoling Zhong, Yang Guo, Anduo Li, Inge Seim, Ling Jiang, Lushan Wang, Simon Ming Yuen Lee, Yujing Liu, Dantong Wang, Guoqiang Zhang, Shanshan Liu, Xiaofeng Wei, Zhen Yue, Shanming Zheng, Xuechun Shen, Sen Wang, Chen Qi, Jing Chen, Chen Ye, Fang Zhao, Jun Wang, Jie Fan, Baitao Li, Jiahui Sun, Xiaodong Jia, Zhangyong Xia, He Zhang, Junian Liu, Yue Zheng, Xin Liu, Jian Wang, Huanming Yang, Karsten Kristiansen, Xun Xu, Thomas Mock, Shengying Li, Wenwei Zhang, Guangyi Fan (2024) Global marine microbial diversity and its potential in bioprospecting. Nature (https://www.nature.com/articles/s41586-024-07891-2)
Allison A. Fong, Clara J. M. Hoppe, Nicole Aberle, Carin J. Ashjian, Philipp Assmy, Youcheng Bai, Dorothee C. E. Bakker, John Paul Balmonte, Kevin R. Barry, Stefan Bertilsson, William Boulton, Jeff Bowman, Deborah Bozzato, Gunnar Bratbak, Moritz Buck, Robert G. Campbell, Giulia Castellani, Emelia J. Chamberlain, Jianfang Chen, Melissa Chierici, Astrid Cornils, Jessie M. Creamean, Ellen Damm, Klaus Dethloff, Elise S. Droste, Oliver Ebenh.h, Sarah Lena Eggers, Anja Engel, Hauke Flores, Agneta Fransson, Stefan Frickenhaus, Jessie Gardner, Cecilia E. Gelfman, Mats A. Granskog, Martin Graeve, Charlotte Havermans, C.line Heuz., Nicole Hildebrandt, Thomas C. J. Hill, Mario Hoppema, Antonia Immerz, Haiyan Jin, Boris Koch, Xianyu Kong, Alexandra Kraberg, Musheng Lan, Benjamin A. Lange, Aud Larsen, Benoit Lebreton, Eva Leu, Brice Loose, Wieslaw Maslowski, Camille Mavis, Katja Metfies, Thomas Mock, Oliver Müller, Marcel Nicolaus, Barbara Niehoff, Daiki Nomura, Eva-Maria Noethig, Marc Oggier, Ellen Oldenburg, Lasse Mork Olsen, Ilka Peeken, Donald K. Perovich, Ovidiu Popa, Benjamin Rabe, Jian Ren, Markus Rex, Anette Rinke, Sebastian Rokitta, Bjoern Rost, Serdar Sakinan, Evgenii Salganik, Fokje L. Schaafsma, Hendrik Schaefer, Katrin Schmidt, Katyanne M. Shoemaker, Matthew D. Shupe, Pauline Snoeijs-Leijonmalm, Jacqueline Stefels, Anders Svenson, Ran Tao, Sinhue Torres-Vald.s, Anders Torstensson, Andrew Toseland Adam Ulfsbo, Maria A. Van Leeuwe, Martina Vortkamp, Alison L. Webb, Rolf R. Gradinger (2024) Overview of the MOSAiC expedition: Ecosystem. Elementa: Science of the Anthropocene (https://doi.org/10.1525/elementa.2023.00135)
Amit Kumar Singh, Prachi Nawkarkar, Vipul Swarup Bhatnagar, Shweta Tripathi, Thomas Mock, Shashi Kumar (2024) Assessing the potential of a genetically modified Parachlorella kessleri-I with low CO2 inducible proteins for enhanced biomass and biofuel productivity. Journal of Environmental Chemical Engineering (https://www.sciencedirect.com/science/article/pii/S2213343724019250)
Flynn KJ, Atkinson A, Beardall J, Berges J, Boersma M, Brunet C, Calbet A, Caron D, Dam H, Glibert P, Hansen PJ, Jin P, Lomas MW, Lønborg C, Mayor D, Meyer B, Millette N, Mock T, Mulholland M, Poulton A, Robinson C, Rokitta S, Rost B, Saiz E, Scanlan D, Schmidt K, Sherr E, Stoecker D, Svensen C, Thiele S, Thingstad F, Unrein F, Våge S (2024) Simulating Plankton - getting it right in the era of Digital Twins of The Ocean; core features of plankton digital twins. Zenodo (https://doi.org/10.5281/zenodo.10952869)
Flynn KJ, Sherr E, Stoecker D, Atkinson A, Boersma M, Bowler C, Brunet C, Lomas MW, Lønborg C, Millette N, Mock T, Needham D, Robinson C, Rokitta S (2024) Simulating Plankton - getting it right in the era of Digital Twins of The Ocean; data to support plankton model construction. Zenodo (https://doi.org/10.5281/zenodo.10953277)
Flynn KJ, Sherr E, Stoecker D, Thingstad F, Atkinson A, Beardall J, Boersma M, Bowler C, Calbet A, Dam H, Glibert P, Hansen PJ, Jin P, Lomas MW, Lønborg C, Menden-Deuer S, Mock T, Needham D, Robinson C, Rokitta S, Rost B, Saiz E, Schmidt K, Thiele S, Våge S (2024) Simulating Plankton – getting it right in the era of Digital Twins of The Ocean; building and challenging perceptions. Zenodo (https://doi.org/10.5281/zenodo.10952556)
Guangning Wang, Lu Huang, Shanshan Zhuang, Fang Han, Qianqian Huang, Mengyuan Hao, Guifang Lin, Longnan Chen, Biying Shen, Feng Li, Xuesong Li, Changping Chen, Yahui Gao, Thomas Mock, Junrong Liang (2024) Resting cell formation in the marine diatom Thalassiosira pseudonana. New Phytologist (https://nph.onlinelibrary.wiley.com/doi/10.1111/nph.19646)
Haoyu Jin, Chao Zhang, Siyu Meng, Qin Wang, Xiaokun Ding, Ling Meng, Yunyun Zhuang, Xiaohong Yao, Yang Gao, Feng Shi, Thomas Mock, Huiwang Gao (2024) Atmospheric deposition and river runoff stimulate the utilization of dissolved organic phosphorous in coastal seas. Nature Communications (https://www.nature.com/articles/s41467-024-44838-7)
Melody Clark, Joseph Hoffman, Lloyd Peck, Luca Bargelloni, Darjan Gande, Charlotte Haverman, Bettina Meyer, Tomaso Patarnello, Tony Phillips, Kathleen Stoof-Leichsenring, David Vendrami, Andreas Beck, Gemma Collins, Michael Friedrich, Kenneth Halanych, Juan Masello, Rebecca Nagel, Karin Noren, Christian Printzen, Micaela Ruiz, Sylke Wohlrab, Burkhard Becker, Kenneth Dumack, Fatemeh Ghaderiardakani, Karin Glaser, Svenja Heesch, Christoph Held, Uwe John, Ulf Karsten, Sarah Kempf, Magnus Lucassen, Anneke Paijmans , Katherina Schimani, Andreas Wallberg, Lea Wunder, Thomas Mock (2023) Multi-omics for studying and understanding polar life. Nature Communications (https://www.nature.com/articles/s41467-023-43209-y)
Jan Strauss, Longji Deng, Shiqiang Gao, Andrew Toseland, Charles Bachy, Chong Zhang, Amy Kirkham, Amanda Hopes, Robert Utting, Eike F. Joest, Alessandro Tagliabue, Christian Loew, Alexandra Z. Worden, Georg Nagel, Thomas Mock (2023) Plastid-localized xanthorhodopsin increases diatom biomass and ecosystems productivity in iron-limited surface oceans. Nature Microbiology (https://www.nature.com/articles/s41564-023-01498-5)
Georgios A. Pavlopoulos, Fotis A. Baltoumas, Sirui Liu, Oguz Selvitopi, Antonio Pedro Camargo, Stephen Nayfach, Ariful Azad, Simon Roux, Lee Call, Natalia N. Ivanova, I Min Chen, David Paez-Espino, Evangelos Karatzas, Novel Metagenome Protein Families Consortium, Ioannis Iliopoulos, Konstantinos Konstantinidis, James M. Tiedje, Jennifer Pett-Ridge, David Baker, Axel Visel, Christos A. Ouzounis, Sergey Ovchinnikov, Aydin Buluç, Nikos C. Kyrpides (2023) Unraveling the functional dark matter through global metagenomics Nature (https://www.nature.com/articles/s41586-023-06583-7)
Madison M. Smith, Hélène Angot, Emelia J. Chamberlain, Elise S. Droste, Salar Karam, Morven Muilwijk, Alison L. Webb, Stephen D. Archer, Ivo Beck, Byron W. Blomquist, Jeff Bowman, Matthew Boyer, Deborah Bozzato, Melissa Chierici, Jessie Creamean, Alessandra D'Angelo, Bruno Delille, Ilker Fer, Allison A. Fong, Agneta Fransson, Niels Fuchs, Jessie Gardner, Mats A. Granskog, Clara J. M. Hoppe, Mario Hoppema, Mario Hoppmann, Thomas Mock, Sofia Muller, Oliver Müller, Marcel Nicolaus, Daiki Nomura, Tuukka Petäjä, Evgenii Salganik, Julia Schmale, Katrin Schmidt, Kirstin Schulz, Matthew D. Shupe, Jacqueline Stefels, Linda Thielke, Sandra Tippenhauer, Adam Ulfsbo, Maria van Leeuwe, Melinda Webster, Masaki Yoshimura, Liyang Zhan (2023) Thin and transient meltwater layers and false bottoms in the Arctic sea ice pack - recent insights on these historically overlooked features. Elementa: Science of the Anthropocene (https://online.ucpress.edu/elementa/article/11/1/00025/197188/Thin-and-transient-meltwater-layers-and-false)
Monica Pichler, Andreas Meindl, Markus Romberger, Annemarie Eckes-Shephard, Carl-Frederik Nyberg-Brodda, Claudia Buhigas, Sergio Llaneza-Lago, Gerhard Lehmann, Amanda Hopes, Gunter Meister, Jan Medenbach, Thomas Mock (2023) Ribosome profiling in the model diatom Thalassiosira pseudonana. Current Protocols (https://currentprotocols.onlinelibrary.wiley.com/doi/10.1002/cpz1.843)
Taylor Priest, Wilken-Jon von Appen, Ellen Oldenburg, Ovidiu Popa, Sinue Torres-Valdes, Christina Bienhold, Katja Metfies, William Boulton, Thomas Mock, Bernhard M. Fuchs, Rudolf Amann, Antje Boetius, Matthias Wietz (2023) Atlantic water influx and sea ice cover drive taxonomic and functional shifts in Arctic marine bacterial communities. The ISME Journal (https://www.nature.com/articles/s41396-023-01461-6)
Antonia Otte, Johanna C. Winder, Longji Deng, Jeremy Schmutz, Jerry Jenkins, Igor V. Grigoriev, Amanda Hopes, Thomas Mock (2023) The diatom Fragilariopsis cylindrus: a model alga to understand cold-adapted life. Journal of Phycology (https://doi.org/10.1111/jpy.13325)
Anthony Duncan, Kerrie Barry, Chris Daum, Emiley Eloe-Fadrosh, Simon Roux, Katrin Schmidt, Susannah G. Tringe, Klaus U. Valentin, Neha Varghese, Asaf Salamov, Igor V. Grigoriev, Richard M. Leggett, Vincent Moulton, Thomas Mock (2023) Dataset of 143 metagenome-assembled genomes from the Arctic and Atlantic Oceans, including 21 for eukaryotic organisms. Data in Brief https://doi.org/10.1016/j.dib.2023.108990
Thomas Mock (2023) Algal model species for advancing biological sciences. Journal of Phycology (https://onlinelibrary.wiley.com/doi/10.1111/jpy.13312)
Johanna C. Winder, William Boulton, Asaf Salamov, Sarah Lena Eggers, Katja Metfies, Vincent Moulton, Thomas Mock (2023) Genetic and structural diversity of prokaryotic ice-binding proteins from the central Arctic Ocean. Genes (https://www.mdpi.com/2073-4425/14/2/363)
Nigel Belshaw, Irina Grouneva, Lior Aram, Assaf Gal, Amanda Hopes, Thomas Mock (2022) Efficient gene replacement by CRISPR/Cas-mediated homologous recombination in the model diatom Thalassiosira pseudonana. New Phytologist (https://nph.onlinelibrary.wiley.com/doi/10.1111/nph.18587)
Thomas Mock, William Boulton, John-Paul Balmonte, Kevin Barry, Stefan Bertilsson, Jeff Bowman, Moritz Buck, Gunnar Bratbak, Emelia J. Chamberlain, Michael Cunliffe, Jessie Creamean, Oliver Ebenhöh, Sarah Lena Eggers, Allison A. Fong, Jessie Gardner, Rolf Gradinger, Mats A. Granskog, Charlotte Havermans, Thomas Hill, Clara J. M. Hoppe, Kerstin Korte, Aud Larsen, Oliver Müller, Anja Nicolaus, Ellen Oldenburg, Ovidiu Popa, Swantje Rogge, Hendrik Schäfer, Katyanne Shoemaker, Pauline Snoeijs-Leijonmalm, Anders Torstensson, Klaus Valentin, Anna Vader, Kerrie Barry, I.-M. A. Chen, Alicia Clum, Alex Copeland, Chris Daum, Emiley Eloe-Fadrosh, Brian Foster, Bryce Foster, Igor V. Grigoriev, Marcel Huntemann, Natalia Ivanova, Alan Kuo, Nikos C. Kyrpides, Supratim Mukherjee, Krishnaveni Palaniappan, T.B.K. Reddy, Asaf Salamov, Simon Roux, Neha Varghese, Tanja Woyke, Dongying Wu, Richard M. Leggett, Vincent Moulton, Katja Metfies (2022) Multi-omics in the central Arctic Ocean for benchmarking biodiversity change. PLOS Biology (https://journals.plos.org/plosbiology/article/metrics?id=10.1371/journal.pbio.3001835)
Uri Neri, Yuri I. Wolf, Simon Roux, Antonio Pedro Camargo, Benjamin Lee, Darius Kazlauskas, I. Min Chen, Natalia Ivanova, Lisa Zeigler Allen, David Paez-Espino, Donald A. Bryant, Devaki Bhaya, RNA Virus Discovery Consortium, Mart Krupovic, Valerian V. Dolja, Nikos C. Kyrpides, Eugene V. Koonin, Uri Gophna (2022) Expansion of the global RNA virome reveals diverse clades of bacteriophages. Cell
Kat Amy Hodgkinson, Jonathan Wright, Gonzalo Garcia Accinelli, Darren Heavans, Amanda Hopes, Thomas Mock, Cock van Oosterhout, Bernardo J. Clavijo (2022) Disentangling the genomic complexity of the Fragilariopsis cylindrus (CCMP1102) genome. BioRxiv (https://www.biorxiv.org/content/10.1101/2022.07.14.500034v1)
Naihao Ye, Wentao Han, Andrew Toseland, Yitao Wang, Xiao Fan, Dong Xu, Cock van Oosterhout, Sea of Change Consortium, Igor V. Grigoriev, Alessandro Tagliabue, Jian Zhang, Yan Zhang, Jian Ma, Huan Qiu, Youxun Li, Xiaowen Zhang, Thomas Mock (2022) The role of zinc in the adaptive evolution of polar phytoplankton. Nature Ecology and Evolution (https://www.nature.com/articles/s41559-022-01750-x)
Brayon J. Fremin, Global Phage Small Open Reading Frame (GP-SmORF) Consortium, Ami S. Bhatt, Nikos C. Kyrpides (2022) Thousands of small, novel genes predicted in global phage genomes. Cell Reports (https://www.cell.com/cell-reports/fulltext/S2211-1247(22)00770-7)
Friedrich H. Kleiner, Katherine E. Helliwell, Abdul Chrachri, Amanda Hopes, Hannah Perry-Wilson, Trupti Gaikwad, Nova Mieszkowska, Thomas Mock, Glen L. Wheeler, Colin Brownlee (2022) Cold induced Ca2+ cyt. elevations function to support osmoregulation in marine diatoms. Plant Physiology (https://academic.oup.com/plphys/advance-article/doi/10.1093/plphys/kiac324/6650634)
Reuben Gilbertson, Emma Langan, Thomas Mock (2022) Diatoms and their microbiomes in complex and changing polar oceans.
Angela Falciatore & Thomas Mock (Eds.) (2022) The Molecular Life of Diatoms, pp 808, Springer International Publishing